Pulling bioinformatics From http://git.bioshell.pl/bioinformatics 28bff53..33be037 master -> origin/master Updating 28bff53..33be037 Fast-forward jbcl/calc/structural/Crmsd.java | 3 ++- jbcl/data/types/Residue.java | 17 +++++++++++++++-- 2 files changed, 17 insertions(+), 3 deletions(-) commit 33be037e3fb45d0979dfd175fa82fedf614c8483 (HEAD, origin/master, origin/HEAD, master) Author: Dominik Gront Date: Thu May 29 14:36:26 2014 +0200 Reisude can reassign an atom jbcl/calc/structural/Crmsd.java | 3 ++- jbcl/data/types/Residue.java | 17 +++++++++++++++-- 2 files changed, 17 insertions(+), 3 deletions(-) Buildfile: build.xml clean: [delete] Deleting directory /home/git/src.git/bioinformatics/classes info: [mkdir] Created dir: /home/git/src.git/bioinformatics/classes [mkdir] Created dir: /home/git/src.git/bioinformatics/classes/jbcl setup-mac: setup-linux: [echo] Building for Linux jbcl: [echo] Classpath is: /home/git/lib/JOCL-0.1.6.jar:/home/git/lib/bioshell.bioinformatics-2.2-mono.jar:/home/git/lib/bioshell.bioinformatics-2.2-tests.jar:/home/git/lib/bioshell.bioinformatics-2.2.jar:/home/git/lib/bioshell.biosimulations-0.9-ff.jar:/home/git/lib/bioshell.biosimulations-0.9-tests.jar:/home/git/lib/bioshell.biosimulations-0.9.jar:/home/git/lib/bioshell.experimental-0.6.jar:/home/git/lib/ejml-0.21.jar:/home/git/lib/ejml.jar:/home/git/lib/jcublas-0.4.0-beta1.jar:/home/git/lib/jcuda-0.4.0-beta1.jar:/home/git/lib/jcufft-0.4.0-beta1.jar:/home/git/lib/jcurand-0.4.0-beta1.jar:/home/git/lib/jcusparse-0.4.0-beta1.jar:/home/git/lib/junit-4.9b2.jar:/home/git/lib/junit.jar:/home/git/lib/proguard.jar [javac] Compiling 531 source files to /home/git/src.git/bioinformatics/classes [javac] Compiling 17 source files to /home/git/src.git/bioinformatics/classes jar: [copy] Copying 1 file to /home/git/src.git/bioinformatics/classes/jbcl/calc/bbq [copy] Copying 1 file to /home/git/src.git/bioinformatics/classes/jbcl [copy] Copying 1 file to /home/git/src.git/bioinformatics/classes/jbcl [copy] Copying 1 file to /home/git/src.git/bioinformatics/classes/jbcl [copy] Copying 9 files to /home/git/src.git/bioinformatics/classes/jbcl/data/types/representation [copy] Copying 35 files to /home/git/src.git/bioinformatics/classes/jbcl/data/dict [jar] Building jar: /home/git/src.git/bioinformatics/bioshell.bioinformatics-2.2.jar [copy] Copying 1 file to /home/git/lib tests: [mkdir] Created dir: /home/git/src.git/bioinformatics/classes/tests [copy] Copying 33 files to /home/git/src.git/bioinformatics/classes/tests/dataset [javac] Compiling 75 source files to /home/git/src.git/bioinformatics/classes [jar] Building jar: /home/git/src.git/bioinformatics/bioshell.bioinformatics-2.2-tests.jar monomers: [copy] Copying 10258 files to /home/git/src.git/bioinformatics/classes/jbcl/data/dict/monomers-txt [jar] Building jar: /home/git/src.git/bioinformatics/bioshell.bioinformatics-2.2-mono.jar [copy] Copying 1 file to /home/git/lib all: BUILD SUCCESSFUL Total time: 15 seconds Deploying bioshell.bioinformatics-2.2.jar Deploying bioshell.bioinformatics-2.2-mono.jar Deploying bioshell.bioinformatics-2.2-tests.jar